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Xing Wang Deng
Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, United States of America

Faculty Member: Plant Biology > Plant-Environment Interactions [ since 29 June 2001 ]
[ Sponsorship ] [ Evaluations ]
Sponsorship

Xing Wang Deng sponsors free access to F1000 for Peking University, Peking, China. Supporting F1000's initiative to make itself available to scientists in all countries, including free access to developing countries (more details).

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Evaluations

The Cold-Inducible CBF1 Factor-Dependent Signaling Pathway Modulates the Accumulation of the Growth-Repressing DELLA Proteins via Its Effect on Gibberellin Metabolism.
Achard P, Gong F, …, Hedden P, Genschik P
Plant Cell 2008 Aug 29 [abstract on PubMed] [related articles] [full text]
Selected by | Xing Wang Deng with Jean-Benoit F. Charron
Evaluated 30 Sep 2008

High-resolution whole-mount imaging of three-dimensional tissue organization and gene expression enables the study of Phloem development and structure in Arabidopsis.
Truernit E, Bauby H, …, Barthélémy J, Palauqui JC
Plant Cell 2008 Jun 20(6):1494-503 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kay Schneitz / Xing Wang Deng / David Oppenheimer / Lieven De Veylder / Jan Traas
Evaluated 10 Jun 2008

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.
Cokus SJ, Feng S, …, Pellegrini M, Jacobsen SE
Nature 2008 Mar 13 452(7184):215-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Wolf Reik / Xing Wang Deng / Ulf Pettersson
Evaluated 25 Mar 2008

Network discovery pipeline elucidates conserved time of day specific cis-regulatory modules.
Michael TP, Mockler TC, Kay SA, Chory J
PLoS Genet 2008 4:e14 [FREE full text]
Selected by | Xing Wang Deng
Evaluated 23 Jan 2008

Light-quality regulation of freezing tolerance in Arabidopsis thaliana.
Franklin KA, Whitelam GC
Nat Genet 2007 Nov 39(11):1410-3 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / Xing Wang Deng
Evaluated 21 Nov 2007

High-resolution profiling of histone methylations in the human genome.
Barski A, Cuddapah S, …, Chepelev I, Zhao K
Cell 2007 May 18 129(4):823-37 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Steven Henikoff / Xing Wang Deng / Michael Meisterernst / Deyou Zheng / Magdalena Zernicka-Goetz
Evaluated 5 Jun 2007

An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants.
Cui H, Levesque MP, …, Scheres B, Benfey PN
Science 2007 Apr 20 316(5823):421-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Xing Wang Deng / Arp Schnittger / Tai-ping Sun / Eric Lam
Evaluated 27 Apr 2007

Genome-wide analysis of Foxp3 target genes in developing and mature regulatory T cells.
Zheng Y, Josefowicz SZ, …, Gavin MA, Rudensky AY
Nature 2007 Feb 22 445(7130):936-40 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Xing Wang Deng / Steve Ward
Evaluated 27 Feb 2007

Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression.
Benhamed M, Bertrand C, Servet C, Zhou DX
Plant Cell 2006 Nov 18(11):2893-903 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 23 Nov 2006

The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants.
Kirik A, Pecinka A, Wendeler E, Reiss B
Plant Cell 2006 Oct 18(10):2431-42 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng / Chris Franklin
Evaluated 14 Nov 2006

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.
Zhang X, Yazaki J, …, Jacobsen SE, Ecker JR
Cell 2006 Sep 22 126(6):1189-201 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Sui Huang / Craig Pikaard / Xing Wang Deng / Frank Lyko / Eric Selker / Vivian Irish / Motoaki Seki
Evaluated 25 Sep 2006

The Arabidopsis SPA1 gene is required for circadian clock function and photoperiodic flowering.
Ishikawa M, Kiba T, Chua NH
Plant J 2006 Jun 46(5):736-46 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Xing Wang Deng
Evaluated 12 Jun 2006

Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing.
Wang Z, Zou Y, …, Zhong Y, Liu YG
Plant Cell 2006 Mar 18(3):676-87 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng / Renate Schmidt
Evaluated 21 Mar 2006

Regulation of phosphate homeostasis by MicroRNA in Arabidopsis.
Chiou TJ, Aung K, …, Chiang SF, Su CL
Plant Cell 2006 Feb 18(2):412-21 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Christoph Benning / Xing Wang Deng / Enrico Martinoia / Julia Kehr
Evaluated 17 Feb 2006

Jasmonate-inducible plant enzymes degrade essential amino acids in the herbivore midgut.
Chen H, Wilkerson CG, …, Phinney BS, Howe GA
Proc Natl Acad Sci U S A 2005 Dec 27 102(52):19237-42 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 10 Jan 2006

An indole-3-acetic acid carboxyl methyltransferase regulates Arabidopsis leaf development.
Qin G, Gu H, …, Chen Z, Qu LJ
Plant Cell 2005 Oct 17(10):2693-704 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis / Xing Wang Deng
Evaluated 8 Nov 2005

A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation.
Horn PJ, Bastie JN, Peterson CL
Genes Dev 2005 Jul 15 19(14):1705-14 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Hiten Madhani / Xing Wang Deng / Eric Selker
Evaluated 8 Sep 2005

Ubiquitin ligase component Cul4 associates with Clr4 histone methyltransferase to assemble heterochromatin.
Jia S, Kobayashi R, Grewal SI
Nat Cell Biol 2005 Oct 7(10):1007-13 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Xing Wang Deng / Eric Selker / Genevieve Almouzni
Evaluated 8 Sep 2005

A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth.
Yadav V, Mallappa C, …, Bhatia S, Chattopadhyay S
Plant Cell 2005 Jul 17(7):1953-66 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 22 Jul 2005

Autoregulation and homodimerization are involved in the activation of the plant steroid receptor BRI1.
Wang X, Li X, …, Asami T, Chory J
Dev Cell 2005 Jun 8(6):855-65 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Xing Wang Deng / Seth J Davis / Kay Schneitz / Thierry Gaude
Evaluated 10 Jun 2005

Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.
Wang X, Goshe MB, …, Huber SC, Clouse SD
Plant Cell 2005 Jun 17(6):1685-703 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Gwyneth Ingram / Xing Wang Deng
Evaluated 10 Jun 2005

Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana.
Wang XJ, Gaasterland T, Chua NH
Genome Biol 2005 6(4):R30 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 29 Apr 2005

The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development.
Millar AA, Gubler F
Plant Cell 2005 Mar 17(3):705-21 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 5 Apr 2005

BZR1 is a transcriptional repressor with dual roles in brassinosteroid homeostasis and growth responses.
He JX, Gendron JM, …, Sun CQ, Wang ZY
Science 2005 Mar 11 307(5715):1634-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng / Tai-ping Sun
Evaluated 21 Feb 2005

A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis.
Yin Y, Vafeados D, …, Asami T, Chory J
Cell 2005 Jan 28 120(2):249-59 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Xing Wang Deng / Julia Kehr / Tai-ping Sun
Evaluated 21 Feb 2005

Photoreceptor ubiquitination by COP1 E3 ligase desensitizes phytochrome A signaling.
Seo HS, Watanabe E, …, Nagatani A, Chua NH
Genes Dev 2004 Mar 15 18(6):617-22 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Pascal Genschik / Xing Wang Deng / Tai-ping Sun
Evaluated 7 Jul 2004

Human De-etiolated-1 regulates c-Jun by assembling a CUL4A ubiquitin ligase.
Wertz IE, O'Rourke KM, …, Deshaies RJ, Dixit VM
Science 2004 Feb 27 303(5662):1371-4 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Ronald Conaway / Xing Wang Deng
Evaluated 7 Jul 2004

The F box protein AFR is a positive regulator of phytochrome A-mediated light signaling.
Harmon FG, Kay SA
Curr Biol 2003 Dec 2 13(23):2091-6 [abstract on PubMed] [related articles] [order article]
Selected by | Xing Wang Deng
Evaluated 9 Jan 2004

Purification of the Arabidopsis 26 S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms.
Yang P, Fu H, …, Ju YM, Vierstra RD
J Biol Chem 2004 Feb 20 279(8):6401-13 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 9 Jan 2004

Characterization of the requirements for localization of phytochrome B to nuclear bodies.
Chen M, Schwab R, Chory J
Proc Natl Acad Sci U S A 2003 Nov 25 100(24):14493-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 9 Jan 2004

The Arabidopsis SLEEPY1 gene encodes a putative F-box subunit of an SCF E3 ubiquitin ligase.
McGinnis KM, Thomas SG, …, Sun TP, Steber CM
Plant Cell 2003 May 15(5):1120-30 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 16 May 2003

PP7 is a positive regulator of blue light signaling in Arabidopsis.
Møller SG, Kim YS, Kunkel T, Chua NH
Plant Cell 2003 May 15(5):1111-9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 15 May 2003

Chemical regulated production of cDNAs from genomic DNA fragments in plants.
Møller SG, Chua NH
Plant J 2002 Nov 32(4):615-22 [abstract on PubMed] [related articles] [order article]
Selected by | Xing Wang Deng
Evaluated 17 Dec 2002

Arabidopsis E2Fc functions in cell division and is degraded by the ubiquitin-SCF(AtSKP2) pathway in response to light.
del Pozo JC, Boniotti MB, Gutierrez C
Plant Cell 2002 Dec 14(12):3057-71 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 17 Dec 2002

A light-switchable gene promoter system.
Shimizu-Sato S, Huq E, Tepperman JM, Quail PH
Nat Biotechnol 2002 Oct 20(10):1041-4 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Xing Wang Deng / Thomas Muir
Evaluated 1 Oct 2002

The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis.
Gagne JM, Downes BP, …, Durski AM, Vierstra RD
Proc Natl Acad Sci U S A 2002 Aug 20 99(17):11519-24 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 1 Oct 2002

Hsp90 as a capacitor of phenotypic variation.
Queitsch C, Sangster TA, Lindquist S
Nature 2002 Jun 6 417(6889):618-24 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Takashi Hirayama / Azim Surani / David Baum / Trudy Mackay / Ulf Pettersson / Philip Benfey / Xing Wang Deng / Peter Langridge
Evaluated 6 Aug 2002

Regulation of Arabidopsis cryptochrome 2 by blue-light-dependent phosphorylation.
Shalitin D, Yang H, …, Whitelam GC, Lin C
Nature 2002 Jun 13 417(6890):763-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | George Coupland / Jo Putterill / Xing Wang Deng
Evaluated 1 Aug 2002

Structural requirement of bilin chromophore for the photosensory specificity of phytochromes A and B.
Hanzawa H, Shinomura T, …, Wada K, Furuya M
Proc Natl Acad Sci U S A 2002 Apr 2 99(7):4725-9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 15 Apr 2002

A blue-light-activated adenylyl cyclase mediates photoavoidance in Euglena gracilis.
Iseki M, Matsunaga S, …, Hori T, Watanabe M
Nature 2002 Feb 28 415(6875):1047-51 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Xing Wang Deng / Laurie Smith
Evaluated 12 Apr 2002

Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore.
Bhoo SH, Davis SJ, …, Karniol B, Vierstra RD
Nature 2001 Dec 13 414(6865):776-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Xing Wang Deng
Evaluated 14 Jan 2002

Natural variation in light sensitivity of Arabidopsis.
Maloof JN, Borevitz JO, …, Weigel D, Chory J
Nat Genet 2001 Dec 29(4):441-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Takashi Hirayama / Xing Wang Deng / Jocelyn Malamy / Greg Gibson / Magnus Nordborg
Evaluated 11 Jan 2002

Origins of phytochrome-modulated Lhcb mRNA expression in seed plants.
Christensen S, Silverthorne J
Plant Physiol 2001 Aug 126(4):1609-18 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Xing Wang Deng
Evaluated 12 Oct 2001

Gibberellins signal nuclear import of PHOR1, a photoperiod-responsive protein with homology to Drosophila armadillo.
Amador V, Monte E, García-Martínez JL, Prat S
Cell 2001 Aug 10 106(3):343-54 [abstract on PubMed] [related articles] [order article]
Selected by | Xing Wang Deng / Nicholas Harberd / Jo Putterill
Evaluated 12 Oct 2001

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