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Marcel Holyoak

No longer a member of F1000[ 01-FEB-2006 - 26-SEP-2008 ]
[ Sponsorship ] [ Biography ] [ Homepage ] [ Evaluations ]
Sponsorship

Marcel Holyoak sponsors free access to F1000 for Center for Scientific Research and Higher Education of Ensenada CICESE, Ensenada, Mexico. Supporting F1000's initiative to make itself available to scientists in all countries, including free access to developing countries (more details).

Biography

Contact details:
Department of Environmental Science and Policy
University of California
1 Shields Avenue, Davis, CA 95616, USA
Tel: +1 530 754-7046
Fax: +1 530 752-3350
Email: maholyoak@ucdavis.edu

Research interests:
The spatial ecology of populations and communities. What is the role of spatial structure in promoting the persistence and coexistence of species? This question merits examination at a variety of levels, ranging from the effects of habitat fragmentation and loss on wildlife conservation, to the population and metapopulation dynamics of individual species, and finally to whole food webs, communities and even spatially-connected "metacommunities". A pluralism of approaches and study systems is also required to address such systems. Conservation questions in the lab focus on rare or imperiled plants and animals, whereas metapopulation and metacommunity questions have used birds, insects in the field and protists in laboratory microcosms. Methods used include simulation models, a broad range of statistical methods and modeling, microcosm experiments, field surveys and geographic information systems.

Conventional explanations for observed levels and patterns of species diversity often assume that communities are closed, isolated entities. For instance, the equilibrium theory of island biogeography assumes a fixed mainland pool of species that randomly arrive on islands and assemble into local communities. This is at odds with the idea that the dynamics of species moving among islands or habitat areas might contribute to species diversity, as captured in metapopulation theories. Metapopulations consist of populations of populations, which go extinct and are reformed by colonization from extent populations. If such spatial dynamics are important for individual species, it follows that a complete explanation of species diversity should entail similar dynamics. It is also possible that the interactions among species, food web structure, and even the functioning of entire ecosystems are influenced by spatial dynamics. A growing body of work addresses such ideas. I edited the first book about metacommunities with Mathew Leibold and Bob Holt in 2005 (University of Chicago Press), and have collaborated on tests of new theories about the role of spatial structure in promoting species diversity.

A somewhat separate theme has been to evaluate the spatial population and metapopulation dynamics of both single species and predator-prey interactions by using protists in laboratory microcosms as a model study system. Using protozoa with generation times of just hours theories that entail long-term demography and even species' persistence can be tested. My research group, collaborators and I have conducted a variety of relatively precise quantitative tests of modern ecological theories, of the kind that would be impossible to conduct in field systems. Such laboratory experiments help us bridge between completely mathematical theories where we can control everything and the large scale natural field processes that we are interested in but cannot collect sufficient information about to study.

I am also fascinated by biostatistics, which form an essential bridge between observational and experimental data and ecological hypotheses and theories. Starting from a PhD in time series analysis and statistical modeling to explore feedback processes in long-term records of animal population abundances I branched out to consider spatial processes. Spatial data are more information rich than long-term data and yet they contain complex correlational problems that invalidate many traditional statistical methods. A growing theme in my research is how to relate large scale environmental data to organismal abundance and occurrence data. Finally, a strong interest in birds and natural history keeps me connected to nature.

Home page

http://www.des.ucdavis.edu/faculty/holyoak/

to email [Help]
Evaluations

When does environmental variation most influence species coexistence?
Snyder RE
Theor Ecol 2008 Online Early [full text]
Selected by | Marcel Holyoak
Evaluated 26 Mar 2008

Network structure, predator-prey modules, and stability in large food webs.
Allesina S, Pascual M
Theor Ecol 2008 1:55-64 [full text]
Selected by | Marcel Holyoak
Evaluated 26 Mar 2008

Diversity and productivity peak at intermediate dispersal rate in evolving metacommunities.
Venail PA, MacLean RC, …, Hochberg ME, Mouquet N
Nature 2008 Mar 13 452(7184):210-4 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Andrew Gonzalez / Marcel Holyoak
Evaluated 26 Mar 2008

Drought mediates the importance of stochastic community assembly.
Chase JM
Proc Natl Acad Sci U S A 2007 104:17430-17434 [full text]
Selected by | Marcel Holyoak
Evaluated 12 Nov 2007

Fluctuations in density of an outbreak species drive diversity cascades in food webs.
Eveleigh ES, McCann KS, …, Umbanhowar J, Faria LD
Proc Natl Acad Sci U S A 2007 Oct 23 104(43):16976-81 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Marcel Holyoak / James Cronin / Vlastimil Krivan
Evaluated 30 Oct 2007

The evolution of trophic structure.
Bell G
Heredity 2007 Nov 99(5):494-505 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Marcel Holyoak
Evaluated 17 Aug 2007

Antagonistic and synergistic interactions among predators.
Huxel GR
Bull Math Biol 2007 Aug 69(6):2093-104 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Marcel Holyoak
Evaluated 19 Jun 2007

The distance decay of similarity in ecological communities
Soininen J, McDonald R, Hillebrand H
Ecography 2007 30:3-12 [full text]
Selected by | Marcel Holyoak
Evaluated 3 May 2007

When and why do non-neutral metacommunities appear neutral?
Walker SC
Theor Popul Biol 2007 May 71(3):318-31 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Marcel Holyoak / Rampal Etienne
Evaluated 13 Mar 2007

'Infotaxis' as a strategy for searching without gradients.
Vergassola M, Villermaux E, Shraiman BI
Nature 2007 Jan 25 445(7126):406-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Marcel Holyoak
Evaluated 14 Feb 2007

Habitat modification alters the structure of tropical host-parasitoid food webs.
Tylianakis JM, Tscharntke T, Lewis OT
Nature 2007 Jan 11 445(7124):202-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Marcel Holyoak / Jordi Bascompte / James Cronin
Evaluated 22 Jan 2007

Diversity and dispersal interactively affect predictability of ecosystem function.
France KE, Duffy JE
Nature 2006 Jun 29 441(7097):1139-43 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Marcel Holyoak / Andrew Gonzalez
Evaluated 10 Jul 2006

Spatial refuge from intraguild predation: implications for prey suppression and trophic cascades.
Finke DL, Denno RF
Oecologia 2006 Aug 149(2):265-75 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Marcel Holyoak
Evaluated 26 Jun 2006

Metacommunity influences on community richness at multiple spatial scales: a microcosm experiment.
Cadotte MW
Ecology 2006 Apr 87(4):1008-16 [abstract on PubMed] [related articles] [order article]
Selected by | Marcel Holyoak / James Cronin
Evaluated 9 May 2006

Parasite genotypes identify source populations of migratory fish more accurately than fish genotypes.
Criscione CD, Cooper B, Blouin MS
Ecology 2006 Apr 87(4):823-8 [abstract on PubMed] [related articles] [order article]
Selected by | Marcel Holyoak
Evaluated 9 May 2006

Fishing through marine food webs.
Essington TE, Beaudreau AH, Wiedenmann J
Proc Natl Acad Sci U S A 2006 Feb 28 103(9):3171-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Marcel Holyoak / Garry Peterson / Mikko Heino
Evaluated 6 Mar 2006

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