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Jurg Bahler
The Wellcome Trust Sanger Institute, hinxton, United Kingdom

Faculty Member: Cell Biology > Cell Growth & Division [ since 1 November 2004 ]
[ Homepage ] [ Evaluations ]
Home page

http://www.sanger.ac.uk/PostGenomics/S_pombe/group/jurg.shtml

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Evaluations

Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation.
Shalem O, Dahan O, …, Segal E, Pilpel Y
Mol Syst Biol 2008 4:223 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 12 Nov 2008

Stochastic switching as a survival strategy in fluctuating environments.
Acar M, Mettetal JT, van Oudenaarden A
Nat Genet 2008 Apr 40(4):471-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jurg Bahler
Evaluated 29 May 2008

Transcription factor substitution during the evolution of fungal ribosome regulation.
Hogues H, Lavoie H, …, Nantel A, Whiteway M
Mol Cell 2008 Mar 14 29(5):552-62 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jurg Bahler
Evaluated 18 Apr 2008

A generic mechanism for adaptive growth rate regulation.
Furusawa C, Kaneko K
PLoS Comput Biol 2008 Jan 4(1):e3 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 18 Apr 2008

Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation.
Shivaswamy S, Bhinge A, …, Hirst M, Iyer VR
PLoS Biol 2008 Mar 18 6(3):e65 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 18 Apr 2008

A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response.
Tan K, Feizi H, …, Ravasi T, Ideker TG
Proc Natl Acad Sci U S A 2008 Feb 26 105(8):2934-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jurg Bahler
Evaluated 18 Mar 2008

Rational design of memory in eukaryotic cells.
Ajo-Franklin CM, Drubin DA, …, Phillips I, Silver PA
Genes Dev 2007 Sep 15 21(18):2271-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jurg Bahler
Evaluated 26 Oct 2007

Rapid, transcript-specific changes in splicing in response to environmental stress.
Pleiss JA, Whitworth GB, Bergkessel M, Guthrie C
Mol Cell 2007 Sep 21 27(6):928-37 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Linda Huang / Jurg Bahler
Evaluated 25 Oct 2007

Widespread use of poly(A) tail length control to accentuate expression of the yeast transcriptome.
Beilharz TH, Preiss T
RNA 2007 Jul 13(7):982-97 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jurg Bahler / Daniel Reines
Evaluated 6 Sep 2007

Strategy of transcription regulation in the budding yeast.
Levy S, Ihmels J, …, Friedlander G, Barkai N
PLoS ONE 2007 2:e250 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 23 May 2007

Organization of interphase microtubules in fission yeast analyzed by electron tomography.
Höög JL, Schwartz C, …, McIntosh JR, Antony C
Dev Cell 2007 Mar 12(3):349-61 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jurg Bahler / Terrence Frey
Evaluated 13 Apr 2007

Adaptive response of a gene network to environmental changes by fitness-induced attractor selection.
Kashiwagi A, Urabe I, Kaneko K, Yomo T
PLoS ONE 2006 1:e49 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 23 Mar 2007

Control of signaling in a MAP-kinase pathway by an RNA-binding protein.
Prinz S, Aldridge C, …, Taylor RJ, Galitski T
PLoS ONE 2007 2:e249 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 13 Mar 2007

Phenotypic consequences of promoter-mediated transcriptional noise.
Blake WJ, Balázsi G, …, Walt DR, Collins JJ
Mol Cell 2006 Dec 28 24(6):853-65 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jurg Bahler
Evaluated 26 Feb 2007

Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe.
Schmidt MW, Houseman A, Ivanov AR, Wolf DA
Mol Syst Biol 2007 3:79 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 20 Feb 2007

Polo kinase controls cell-cycle-dependent transcription by targeting a coactivator protein.
Darieva Z, Bulmer R, …, Morgan BA, Sharrocks AD
Nature 2006 Nov 23 444(7118):494-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 5 Dec 2006

The transcriptional activity of RNA polymerase I is a key determinant for the level of all ribosome components.
Laferté A, Favry E, …, Carles C, Chédin S
Genes Dev 2006 Aug 1 20(15):2030-40 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jonathan R. Warner / Jurg Bahler
Evaluated 24 Oct 2006

Co-evolution of transcriptional and post-translational cell-cycle regulation.
Jensen LJ, Jensen TS, …, Brunak S, Bork P
Nature 2006 Oct 5 443(7111):594-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jurg Bahler
Evaluated 20 Oct 2006

Quantification of protein half-lives in the budding yeast proteome.
Belle A, Tanay A, …, Shamir R, O'Shea EK
Proc Natl Acad Sci U S A 2006 Aug 29 103(35):13004-9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 30 Aug 2006

Proteome analysis of yeast response to various nutrient limitations.
Kolkman A, Daran-Lapujade P, …, Slijper M, Heck AJ
Mol Syst Biol 2006 2:2006.0026 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 7 Jul 2006

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise.
Newman JR, Ghaemmaghami S, …, DeRisi JL, Weissman JS
Nature 2006 Jun 15 441(7095):840-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Deyou Zheng / Jurg Bahler
Evaluated 5 Jul 2006

Release of extraction-resistant mRNA in stationary phase Saccharomyces cerevisiae produces a massive increase in transcript abundance in response to stress.
Aragon AD, Quiñones GA, …, Roy S, Werner-Washburne M
Genome Biol 2006 7(2):R9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 8 May 2006

Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray.
Gresham D, Ruderfer DM, …, Botstein D, Kruglyak L
Science 2006 Mar 31 311(5769):1932-6 [abstract on PubMed] [related articles] [FREE full text]
Selected by | B. Montgomery Pettitt / Jurg Bahler / Tony Long
Evaluated 8 May 2006

A high-resolution map of transcription in the yeast genome.
David L, Huber W, …, Davis RW, Steinmetz LM
Proc Natl Acad Sci U S A 2006 Apr 4 103(14):5320-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 8 May 2006

Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile.
Schuldiner M, Collins SR, …, Weissman JS, Krogan NJ
Cell 2005 Nov 4 123(3):507-19 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Andrew Emili / Deyou Zheng / Jef Boeke / Jurg Bahler
Evaluated 21 Feb 2006

Global analysis of protein phosphorylation in yeast.
Ptacek J, Devgan G, …, Predki PF, Snyder M
Nature 2005 Dec 1 438(7068):679-84 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Marilyn Parsons / Jurg Bahler
Evaluated 2 Feb 2006

Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.
Tu BP, Kudlicki A, Rowicka M, McKnight SL
Science 2005 Nov 18 310(5751):1152-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Ruma Banerjee / Carl Thummel / Jurg Bahler / Arlen Johnson
Evaluated 9 Dec 2005

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.
Wyers F, Rougemaille M, …, Libri D, Jacquier A
Cell 2005 Jun 3 121(5):725-37 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Daniel Reines / Christian Velot / Jurg Bahler
Evaluated 31 Oct 2005

Genomewide analysis of nucleosome density histone acetylation and HDAC function in fission yeast.
Wirén M, Silverstein RA, …, Grunstein M, Ekwall K
EMBO J 2005 Aug 17 24(16):2906-18 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 19 Sep 2005

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast.
Gerber AP, Herschlag D, Brown PO
PLoS Biol 2004 Mar 2(3):E79 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Richard Maraia / Gabriele Varani / Jurg Bahler
Evaluated 18 Aug 2005

Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast.
Tanay A, Regev A, Shamir R
Proc Natl Acad Sci U S A 2005 May 17 102(20):7203-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 19 Jul 2005

The TOR and EGO protein complexes orchestrate microautophagy in yeast.
Dubouloz F, Deloche O, …, Cameroni E, De Virgilio C
Mol Cell 2005 Jul 1 19(1):15-26 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jurg Bahler / David C Rubinsztein
Evaluated 19 Jul 2005

Polo kinase links the stress pathway to cell cycle control and tip growth in fission yeast.
Petersen J, Hagan IM
Nature 2005 May 26 435(7041):507-12 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | David Glover / Jurg Bahler
Evaluated 8 Jul 2005

Dynamic complex formation during the yeast cell cycle.
de Lichtenberg U, Jensen LJ, Brunak S, Bork P
Science 2005 Feb 4 307(5710):724-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Andrius Kazlauskas / Jurg Bahler
Evaluated 20 Jun 2005

Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.
Radonjic M, Andrau JC, …, van Berkum NL, Holstege FC
Mol Cell 2005 Apr 15 18(2):171-83 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jurg Bahler / Michael Meisterernst
Evaluated 27 Apr 2005

Genomic characterization reveals a simple histone H4 acetylation code.
Dion MF, Altschuler SJ, Wu LF, Rando OJ
Proc Natl Acad Sci U S A 2005 Apr 12 102(15):5501-6 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler / Tom Misteli
Evaluated 7 Apr 2005

TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1.
Martin DE, Soulard A, Hall MN
Cell 2004 Dec 29 119(7):969-79 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Mike Bevan / Thomas Nystrom / Jurg Bahler / Sergio Moreno
Evaluated 3 Feb 2005

Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale.
Beyer A, Hollunder J, Nasheuer HP, Wilhelm T
Mol Cell Proteomics 2004 Nov 3(11):1083-92 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 17 Dec 2004

Global role of TATA box-binding protein recruitment to promoters in mediating gene expression profiles.
Kim J, Iyer VR
Mol Cell Biol 2004 Sep 24(18):8104-12 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jurg Bahler
Evaluated 29 Nov 2004

A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size.
Jorgensen P, Rupes I, …, Broach JR, Tyers M
Genes Dev 2004 Oct 15 18(20):2491-505 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Ian Willis / Michael Lenhard / Jurg Bahler
Evaluated 10 Nov 2004

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